If the Supplier/Customer has nothing set against their VAT Registration, then by default the EU suppliers and customers it will use the T VAT Code.
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If you enter their VAT Registration number, it will then use whatever is set in that VAT screen (as long as the code set as a default is an EC type VAT code).
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To make the changes:
Click Debtors/Creditors
Click Customers/Suppliers
Search for the record you wish to edit
Click Edit
Click VAT
Add in the VAT Registration number
Edit the VAT Code
Save your changes
